Basic Information
VIS ID
TVIS30008608
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
88913484/87992332 (Hg38)
End
88913484/87992332 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/691749; hsa-mir-1243/Downstream/11005055;
Nearest TSS
ENST00000502981/Upstream/15452; ENST00000506727/Downstream/15336;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/569325, chr4-CpG: 135/Downstream/14996
Nearby gene
SPP1(No orient, 8921)
Upstream sequence
atttactctaaaatttatatgggaaggtaaaggctttaagaataaccaaaacaattttgaaaaagaactataaatcactctttatgattttaaggcttac
Downstream sequence
tatgtagctacagtaatcaagaaagggtggtactggcagaagaatggaaacatagatcaatggaacagactggagaacccagaaatatatctacataaac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate