Basic Information
VIS ID
TVIS30008614
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
92777954/91856803 (Hg38)
End
92777954/91856803 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA4E
Nearest miRNA
hsa-mir-12113/Upstream/4556220; hsa-mir-1243/Downstream/7140584;
Nearest TSS
ENST00000502981/Upstream/531497; ENST00000505511/Downstream/31083;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/1017687, chr4-CpG: 26/Downstream/325663
Nearby gene
CCSER1(No orient, 254584)
Upstream sequence
TTTATAAATAACATTATAATATTAACATTAGATCTTTGCATTATTTTCATTTTTCACtttttttttaaacggagtctcgctctgtcatccaggcaggagt
Downstream sequence
gtagcggcatgatcttggctcactgcaacctccacctcccggattcaagagagtctcctgcctcagcctcccaagtagctagggctacaggcacacacca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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