Basic Information
VIS ID
TVIS30008617
Fusion event
HIV-LOC100507053 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q23
Reference genome
GRCh37/hg19
Start
100056390/99135239 (Hg38)
End
100056390/99135239 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LOC100507053
Nearest miRNA
hsa-mir-12113/Upstream/137779; hsa-mir-1243/Downstream/2105556;
Nearest TSS
ENST00000502981/Upstream/46288; ENST00000506454/Downstream/1298;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/46261, chr4-CpG: 40/Downstream/428331
Upstream sequence
tgaagacagaggctggtggtggctgatgcctgtaatcctagcactttgggaggtcgaagtgggaggactgcttgagcctaggagttcaagaccagcctgg
Downstream sequence
gcgacatagggagaccctgtctctataaaaaattaaaaaaatagccaggcatcgtggtgcatgcctgtaatcccagctacttggagggctgaagtgggaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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