Basic Information
VIS ID
TVIS30008620
Fusion event
HIV-CENPE integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q24
Reference genome
GRCh37/hg19
Start
104085884/103164727 (Hg38)
End
104085884/103164727 (Hg38)
Orient
-
Location type
Intronic
Target gene
CENPE
miRNAs that regulate target gene
hsa-mir-215-5p ; hsa-mir-192-5p
Nearest miRNA
hsa-mir-12113/Upstream/1834313; hsa-mir-1243/Downstream/6323971;
Nearest TSS
ENST00000502981/Upstream/18946; ENST00000510200/Downstream/17236;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/87877, chr4-CpG: 36/Downstream/33435
Upstream sequence
ttcttccaaaatgtttcttcaggtaatctatccaacatgtttctttaggtaatcaatataaaaaaaatgaacaattttacattcttttttatatactatg
Downstream sequence
tcaattcagtctggtcccatttcaagtgcttaattgccacatatggttagtggctaccccactgtagaacacagTCTTAGACATTTGTACTGCTTTTAAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate