Basic Information
VIS ID
TVIS30008621
Fusion event
HIV-TET2-AS1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q24
Reference genome
GRCh37/hg19
Start
106185859/105264702 (Hg38)
End
106185859/105264702 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
TET2-AS1
Nearest miRNA
hsa-mir-12113/Upstream/3934288; hsa-mir-1243/Downstream/4223996;
Nearest TSS
ENST00000502981/Upstream/86639; ENST00000265154/Downstream/134934;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/117891, chr4-CpG: 82/Downstream/208692
Upstream sequence
AAATGTGTTGATGTAATGTCTAGATAAATTAAGTCAATTAATAGTTGTAAATGGATGAGATGCTTCTGAATGGATAAAATATTTTTATATTGCATGGTAG
Downstream sequence
GTACTATTGGTAATATTCATCCATGTATGTTAATATGCTTTAGAGATCAAAATAATAGCCATGTGATGTTTCCACACAGTACACGGGAAGACCATTTGAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate