Basic Information
VIS ID
TVIS30008630
Fusion event
HIV-COL25A1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q25
Reference genome
GRCh37/hg19
Start
109842212/108921056 (Hg38)
End
109842212/108921056 (Hg38)
Orient
+
Location type
Intronic
Target gene
COL25A1
Nearest miRNA
hsa-mir-12113/Upstream/7590642; hsa-mir-1243/Downstream/567642;
Nearest TSS
ENST00000502981/Upstream/88364; ENST00000500526/Downstream/129126;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/157850, chr4-CpG: 98/Downstream/380758
Upstream sequence
TGCAATGTAGTTTCTCAGCAAATGGACACATTAGATGACTTCTGCACCTGCAAATCTTCAGTAAGCAGATTTGCAAAGGAAATAATTGAATAGCATTACA
Downstream sequence
AAGAAACATGACTTTTTTTTTCTGTTCTTCCTCTTAGGAAATATGGTCAACTAACCTGCACAAAAACTTGTTTACAAACTAGGGGAGGCCAGTGTCAACT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate