Basic Information
VIS ID
TVIS30008631
Fusion event
HIV-COL25A1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q25
Reference genome
GRCh37/hg19
Start
109866527/108945371 (Hg38)
End
109866527/108945371 (Hg38)
Orient
-
Location type
Intronic
Target gene
COL25A1
Nearest miRNA
hsa-mir-12113/Upstream/7614957; hsa-mir-1243/Downstream/543327;
Nearest TSS
ENST00000502981/Upstream/112679; ENST00000500526/Downstream/104811;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/182165, chr4-CpG: 98/Downstream/356443
Upstream sequence
CATTTCACAGGGGCTGCCTCCAGATCCTAGGTAGACACTGACTCTGCTTCTTGCACGAGTTCTTTGGAGGGTTGGTTTGTAAAGTACAGGTGTTGACACC
Downstream sequence
TATCTTCAGTACAGGTGTTGACACCTTATGGCTTTGTGTGGCCATACCTGCTAGGCTTCTCTAGCTGCTCATACAGAGGATATAATTTTTATTAACCATA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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