Basic Information
VIS ID
TVIS30008634
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q25
Reference genome
GRCh37/hg19
Start
111603395/110682239 (Hg38)
End
111603395/110682239 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/1193444; hsa-mir-1243/Downstream/178343;
Nearest TSS
ENST00000502981/Upstream/40116; ENST00000512794/Downstream/112164;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/42587, chr4-CpG: 120/Downstream/1463075
Nearby gene
PITX2(No orient, 40116)
Nearest cancer related gene
PITX2(OG, No orient, 40116)
Upstream sequence
ATTATGATTTTAAGTATTGGTAAATTAGGACAGATTTCTAAAATTTATGTTCATAGAGTTTTGTTGTTGTTGTTAAGGGACCCACTTTTATGTTGGTCAT
Downstream sequence
TAATATGAATTAAATATTACTTCCTCATAGAAACCCTAATGATTTTTCTTTTGGTCAAACATAGACCTAGGTTTGTTTCTTAGACTATGCTATTAATTTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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