Basic Information
VIS ID
TVIS30008636
Fusion event
HIV-ZGRF1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q25
Reference genome
GRCh37/hg19
Start
113483461/112562305 (Hg38)
End
113483461/112562305 (Hg38)
Orient
+
Location type
Intronic
Target gene
ZGRF1
Nearest miRNA
hsa-mir-12113/Upstream/1701658; hsa-mir-1243/Downstream/85569;
Nearest TSS
ENST00000502981/Upstream/767; ENST00000504079/Downstream/21756;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/38111, chr4-CpG: 59/Downstream/74571
Upstream sequence
gccCCTTTTCTCTTTTTAACCACTGACAGAGAATAATGTCATAGTCTGAAAAATAATTACAATTTTATTGGCAACATTTATATACTGTACTTTTATTGAA
Downstream sequence
TTTTCATATTTACTTCTGATTACCATTTTTTAATACCAATGACTCAAAGGTAAAAAATGACTTACGTTGTTAACAGGTACTGTGTTAGAGGTAGAGTAGC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate