Basic Information
VIS ID
TVIS30008641
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q26
Reference genome
GRCh37/hg19
Start
115067666/114146510 (Hg38)
End
115067666/114146510 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/994148; hsa-mir-1305/Downstream/510249;
Nearest TSS
ENST00000502981/Upstream/166783; ENST00000507710/Downstream/451945;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/166856, chr4-CpG: 122/Downstream/451756
Nearby gene
ARSJ(No orient, 166788)
Upstream sequence
cttaattaagggtgtggttagttccatatgtccccaggccctaccaattgtgaaacaggcaaaacagacaattttcaaaacccaaaaagcagtttgtaac
Downstream sequence
cttaaaatatgtagcaaaccttgcatctgacctgcattttaccaataaactttaagactgtttttactttcaaagattaaagtcacatgaacaaaaaggt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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