Basic Information
VIS ID
TVIS30008642
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q26
Reference genome
GRCh37/hg19
Start
115485969/114564813 (Hg38)
End
115485969/114564813 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/1412451; hsa-mir-1305/Downstream/91946;
Nearest TSS
ENST00000502981/Upstream/585086; ENST00000507710/Downstream/33642;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/585159, chr4-CpG: 122/Downstream/33453
Nearby gene
UGT8(No orient, 33642)
Upstream sequence
AATTAAAAACGAAGAATTTACAAATGAAGGTTTGGCAACATTAGTGACAATGGAGAAGCTGATATTCAAGGAACATATTAAAGATCTTCATATTGCACAG
Downstream sequence
TGAGAATGTTTAGTCCCATCTCTTGAAATGACTAGGACAATCTCATATGCTTCTTTTCAGTCCCTCTCAATAACTCAGTGGGGTGCTGAGTCAAGACTCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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