Basic Information
VIS ID
TVIS30008648
Fusion event
HIV-BBS7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q27
Reference genome
GRCh37/hg19
Start
122781739/121860584 (Hg38)
End
122781739/121860584 (Hg38)
Orient
-
Location type
Intronic
Target gene
BBS7
miRNAs that regulate target gene
hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-let-7b-5p
Nearest miRNA
hsa-mir-12113/Upstream/7203730; hsa-mir-1305/Downstream/3646675;
Nearest TSS
ENST00000502981/Upstream/1561; ENST00000567769/Downstream/1095;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/36472, chr4-CpG: 50/Downstream/9461
Upstream sequence
TAGTAAAAACATTTAAGAAACCACTTGAAGAGACTGTTACTGAGAAACTCTCTATCTTTCTCACACTACTATCCATATAACTGTCCGAATGTAGAGTTAT
Downstream sequence
GCTATTAACACATTACTTTCAGTATTCCATAATTATCATTGGCCATGTCTATATACAAGTGTATTTCAAAAGTGTTACTATTCTTGTTAAACCATTTGAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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