Basic Information
VIS ID
TVIS30008649
Fusion event
HIV-KIAA1109 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q27
Reference genome
GRCh37/hg19
Start
123128246/122207091 (Hg38)
End
123128246/122207091 (Hg38)
Orient
-
Location type
Intronic
Target gene
KIAA1109
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-615-3p ; hsa-mir-484 ; hsa-mir-25-3p ; hsa-mir-32-5p ; hsa-mir-92a-3p ; hsa-mir-219a-2-3p ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-410-3p ; hsa-mir-497-3p ; hsa-mir-92b-3p ; hsa-mir-873-5p ; hsa-mir-4528 ; hsa-mir-5589-3p ; hsa-mir-190a-3p ; hsa-mir-340-5p ; hsa-mir-4722-5p ; hsa-mir-1286 ; hsa-mir-944
Nearest miRNA
hsa-mir-12113/Upstream/7550237; hsa-mir-1305/Downstream/3300168;
Nearest TSS
ENST00000502981/Upstream/10342; ENST00000482114/Downstream/2083;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/54470, chr4-CpG: 45/Downstream/172161
Upstream sequence
ATTTTTTTAGTTACACAAAAGAAAAATTCATTTTTGACTGGTGTTAGAAAATCTGTGTTTTACTTTTCTGAGTTTCAACTAACTTTACAATTTCTATTCA
Downstream sequence
CTACCCCAATAATTTTAGATTTAATTCAAGACTGGTCTAGTGACAGTCCTCCAGACATTTTTTCATTTGTTCCATATACGTGGAATTTTAAAATCATGTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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