VISDB Viral Integration Site DataBase

VIS ID

TVIS30008652

Fusion event

HIV-SPATA5 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr4

Cytoband

q28.1

Reference genome

Start

End

124061336/123140181 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-16-5p ; hsa-mir-345-3p ; hsa-mir-186-5p ; hsa-mir-489-3p ; hsa-mir-670-5p ; hsa-mir-4732-3p ; hsa-mir-6719-3p ; hsa-mir-8066 ; hsa-mir-5706 ; hsa-mir-4782-5p ; hsa-mir-1257 ; hsa-mir-3913-3p ; hsa-mir-6839-5p ; hsa-mir-378j ; hsa-mir-4319 ; hsa-mir-125b-5p ; hsa-mir-125a-5p ; hsa-mir-6866-3p ; hsa-mir-188-5p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7977 ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-24-3p ; hsa-mir-3934-3p ; hsa-mir-2467-5p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-383-3p ; hsa-mir-6748-5p ; hsa-mir-4483 ; hsa-mir-1293 ; hsa-mir-6766-5p ; hsa-mir-6756-5p ; hsa-mir-6745 ; hsa-mir-363-5p ; hsa-mir-6811-5p ; hsa-mir-6516-5p ; hsa-mir-4722-5p ; hsa-mir-6511b-5p ; hsa-mir-1286 ; hsa-mir-873-5p ; hsa-mir-2276-3p ; hsa-mir-3121-5p ; hsa-mir-6787-3p ; hsa-mir-1304-3p ; hsa-mir-6827-3p ; hsa-mir-6736-3p ; hsa-mir-340-3p ; hsa-mir-6890-3p ; hsa-mir-216a-5p ; hsa-mir-6769a-5p ; hsa-mir-6769b-5p ; hsa-mir-4284 ; hsa-mir-3123 ; hsa-mir-3151-3p ; hsa-mir-3192-3p ; hsa-mir-3919 ; hsa-mir-4756-3p ; hsa-mir-4762-3p

Nearest miRNA

hsa-mir-12113/Upstream/8483327; hsa-mir-1305/Downstream/2367078;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/216898, chr4-CpG: 179/Downstream/256971

Upstream sequence

TCAGGAAAATAAATACTGTACTATATTTCGTTTCTTTCCTTCAATCCTGATATGTAAAGTAAACAAACCTGTTTTCAGAATATCTAACCTTTAGTTGAGT

Downstream sequence

AAATGACAGGTAGGAAATAAAGCTGTTGATACGGGAGAATGAGTAAGTGAAAAAATCCATCCTTTGTCAACCACTCTTATTTTTTAAATTGAATCTGCTT