Basic Information
VIS ID
TVIS30008654
Fusion event
HIV-SLC25A31 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q28.1
Reference genome
GRCh37/hg19
Start
128664489/127743334 (Hg38)
End
128664489/127743334 (Hg38)
Orient
-
Location type
Intronic
Target gene
SLC25A31
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-12113/Upstream/2236027; hsa-mir-1305/Downstream/15600126;
Nearest TSS
ENST00000502981/Upstream/12956; ENST00000508549/Downstream/38487;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/12512, chr4-CpG: 135/Downstream/38341
Upstream sequence
atcctcctacttcagcctcctgagtagttggaactacaggcacatgccacggcacacggctaatttatttttttaattttttgtagagatgcggtctcac
Downstream sequence
aatgttgcccaggctggtcttgagttcttgagctcaagcagtcctcccaatttggcttcccaaagtgctggaattacaggcgtgagccactgcacctagc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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