Basic Information
VIS ID
TVIS30008657
Fusion event
HIV-LARP1B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q28.2
Reference genome
GRCh37/hg19
Start
129061058/128139903 (Hg38)
End
129061058/128139903 (Hg38)
Orient
-
Location type
Intronic
Target gene
LARP1B
miRNAs that regulate target gene
hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-423-3p
Nearest miRNA
hsa-mir-12113/Upstream/2632596; hsa-mir-1305/Downstream/15203557;
Nearest TSS
ENST00000502981/Upstream/17786; ENST00000508648/Downstream/39411;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/77580, chr4-CpG: 133/Downstream/147239
Upstream sequence
ataaaacttatattagcaatgttaagacatcagatggtaagtagagtttgggagtatttggagcaagaacctcaatctgtgggaataaaaaatggtaaac
Downstream sequence
caTATGCTATGATCCACCATTTCCACTCAggaatatattctcgagttgcattgtttagtagacattaaccacatgtagttattgagcccttgaaatgtgg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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