Basic Information
VIS ID
TVIS30008658
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q28.2
Reference genome
GRCh37/hg19
Start
130956888/130035733 (Hg38)
End
130956888/130035733 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/4528426; hsa-mir-1305/Downstream/13307727;
Nearest TSS
ENST00000502981/Upstream/198372; ENST00000508942/Downstream/340496;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/941989, chr4-CpG: 27/Downstream/1687459
Nearby gene
LOC105377418(-4988) ;
Upstream sequence
CCCCCTCCCTTCTTTATTATGGGACACAAAAGATGTTCCTGTTTTGAAAGCCTAATGTTAGTGATATTTCCTAATTCATACACTGGTTGGTACTAGTACA
Downstream sequence
CAAATTTGAGGTTTTAGACCATATTGCAGGAATGAAGGTGGATATGGGAGATGTGATATAGATAAATAGTTTATATTTAAAGGTCCCTCAAACAAATTGT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate