Basic Information
VIS ID
TVIS30008665
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q31.21
Reference genome
GRCh37/hg19
Start
146146216/145225064 (Hg38)
End
146146216/145225064 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/1881529; hsa-mir-1305/Downstream/1183519;
Nearest TSS
ENST00000502981/Upstream/44903; ENST00000514168/Downstream/115357;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/44161, chr4-CpG: 155/Downstream/256323
Nearby gene
OTUD4(No orient, 45384)
Upstream sequence
ttaaggagattttgggctgagacgatggggttttctagatatacaatcatgtcatctgcaaacagggacaatttgacttcctcttttcctgattgaatac
Downstream sequence
cctttatttctttctcttgcctgattgccctggccagaacttccaacactatgttgaataggagtggtgagagagggcatcattgtcttgtgccagtttt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate