Basic Information
VIS ID
TVIS30008669
Fusion event
HIV-ARHGAP10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q31.23
Reference genome
GRCh37/hg19
Start
148837899/147916748 (Hg38)
End
148837899/147916748 (Hg38)
Orient
+
Location type
Intronic
Target gene
ARHGAP10
miRNAs that regulate target gene
hsa-mir-17-5p ; hsa-mir-214-3p
Nearest miRNA
hsa-mir-12113/Upstream/134080; hsa-mir-1305/Downstream/4572579;
Nearest TSS
ENST00000502981/Upstream/34881; ENST00000513548/Downstream/29491;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/183981, chr4-CpG: 294/Downstream/525312
Upstream sequence
GTAGCAGAAACTTCAGTGAATGGTAAAGATACGGGGTCCATCGCTGATGTTATAAAAGGAAGTGATTCCAAAAGTCCACATCCAGGAAAATTTCTACATG
Downstream sequence
GTATAGCTGCGGGGGCATATCTAGAGGGTAAAGGCACAGTGTACTGCCTGAGAGGAGCTCTTTTCGCAAACCTAGAGCCTGGAAGCCAAGTTCTGAAGAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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