Basic Information
VIS ID
TVIS30008672
Fusion event
HIV-GATB integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
152624496/151703344 (Hg38)
End
152624496/151703344 (Hg38)
Orient
-
Location type
Intronic
Target gene
GATB
miRNAs that regulate target gene
hsa-mir-192-5p ; hsa-let-7e-5p
Nearest miRNA
hsa-mir-12113/Upstream/3920676; hsa-mir-1305/Downstream/785983;
Nearest TSS
ENST00000502981/Upstream/1826; ENST00000513617/Downstream/12900;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/293623, chr4-CpG: 21/Downstream/57545
Upstream sequence
CTTCACAAAGGAAAGGTGGCCGATCTCACAACTTTGTTGCTTAAAACTTCAACCTGCTAAACTCAATGAGAAAAAAATAAAAGTTTCAATTATCTTATGC
Downstream sequence
CTGTTCTTAGCATTTGCTTTATTTGTGGGTCTCATATTAAGTAGTTCAACTTAATTTATCATGAAATAGCATCATATGAGGTTCAAGGGAACTACCATCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate