VISDB Viral Integration Site DataBase

VIS ID

TVIS30008674

Fusion event

HIV-FBXW7 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr4

Cytoband

q31.3

Reference genome

Start

End

153412741/152491589 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-197-3p ; hsa-mir-107 ; hsa-mir-128-3p ; hsa-mir-223-3p ; hsa-mir-27a-3p ; hsa-mir-590-3p ; hsa-mir-103a-3p ; hsa-mir-101-3p ; hsa-mir-16-5p ; hsa-mir-503-5p ; hsa-mir-182-5p ; hsa-mir-25-3p ; hsa-mir-510-3p ; hsa-mir-4639-5p ; hsa-mir-2052 ; hsa-mir-4328 ; hsa-mir-4698 ; hsa-mir-570-5p ; hsa-mir-548ba ; hsa-mir-548ai ; hsa-mir-548ag ; hsa-mir-203a-3p ; hsa-mir-1303 ; hsa-mir-664b-3p ; hsa-mir-190a-3p ; hsa-mir-579-3p ; hsa-mir-380-3p ; hsa-mir-411-3p ; hsa-mir-379-3p ; hsa-mir-4495 ; hsa-mir-656-3p ; hsa-mir-5011-5p ; hsa-mir-5694 ; hsa-mir-32-5p ; hsa-mir-92a-3p ; hsa-mir-384 ; hsa-mir-363-3p ; hsa-mir-182-3p ; hsa-mir-155-3p ; hsa-mir-770-5p ; hsa-mir-155-5p ; hsa-mir-24-3p ; hsa-mir-223-5p ; hsa-mir-367-3p ; hsa-mir-1302 ; hsa-mir-144-3p ; hsa-mir-296-3p ; hsa-mir-3122 ; hsa-mir-3192-5p ; hsa-mir-3529-3p ; hsa-mir-3913-5p ; hsa-mir-4252 ; hsa-mir-4298 ; hsa-mir-4425 ; hsa-mir-4701-5p ; hsa-mir-588 ; hsa-mir-6823-5p ; hsa-mir-92a-1-5p

Nearest miRNA

hsa-mir-12113/Upstream/2173; hsa-mir-1305/Downstream/44839;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/730450, chr4-CpG: 144/Downstream/43367

Nearest cancer related gene

FBXW7(TSG, No orient, 0)

Upstream sequence

ctgaatcagaaaaggctttcccccatggacgtgacgtttagaatgatatttggaagatgTCTTAAAAAGTCAAGAGGAATTCAGGATAGTGGCTGGTGGG

Downstream sequence

GAGAAAGGAGTGCTGAATCAGGGTACGATTCACAGAGAAGAAAATTACATTAGTAAGCATTCTTTATTAAGCTGGCAGTCAGACCACAGGTGCTGTTTAA