Basic Information
VIS ID
TVIS30008682
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q32.1
Reference genome
GRCh37/hg19
Start
161190756/160269604 (Hg38)
End
161190756/160269604 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/1140710; hsa-mir-1305/Downstream/2823970;
Nearest TSS
ENST00000502981/Upstream/491820; ENST00000512652/Downstream/269650;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/1165621, chr4-CpG: 71/Downstream/2896705
Nearby gene
RAPGEF2(No orient, 909455)
Upstream sequence
attctgtgaagaaagtcattggtagcttgatggggatggcattgaatctataaattaccttgggcagtacggccattttcatgatattgattcttcctac
Downstream sequence
ccacgagcatggaatgttcttccatttgtttttatgctgttttatttcattgagcagtggtttgtagttctccttgaagaggtcctttacatcccttgta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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