VISDB Viral Integration Site DataBase

VIS ID

TVIS30008685

Fusion event

HIV-MSMO1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr4

Cytoband

q32.3

Reference genome

Start

End

166256314/165335162 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-19a-3p ; hsa-mir-335-5p ; hsa-mir-26b-5p ; hsa-let-7e-5p ; hsa-mir-223-3p ; hsa-mir-520g-3p ; hsa-mir-520h ; hsa-mir-561-3p ; hsa-mir-582-5p ; hsa-mir-4328 ; hsa-mir-3973 ; hsa-let-7a-3p ; hsa-let-7b-3p ; hsa-let-7f-1-3p ; hsa-mir-17-5p ; hsa-mir-19b-3p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-98-3p ; hsa-mir-106a-5p ; hsa-mir-130a-3p ; hsa-mir-106b-5p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-20b-5p ; hsa-mir-519c-3p ; hsa-mir-526b-3p ; hsa-mir-519b-3p ; hsa-mir-519d-3p ; hsa-mir-519a-3p ; hsa-mir-454-3p ; hsa-mir-301b-3p ; hsa-mir-3120-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-3670 ; hsa-mir-3688-3p ; hsa-mir-5093 ; hsa-mir-498 ; hsa-mir-548s ; hsa-mir-3672 ; hsa-mir-6864-3p ; hsa-mir-6801-5p ; hsa-mir-3926 ; hsa-mir-769-5p ; hsa-mir-4786-5p ; hsa-mir-3190-5p ; hsa-mir-6849-3p ; hsa-mir-6500-3p ; hsa-mir-3614-5p ; hsa-mir-599 ; hsa-mir-4666a-3p ; hsa-mir-381-3p ; hsa-mir-300 ; hsa-mir-513b-5p ; hsa-mir-4277 ; hsa-mir-584-3p ; hsa-mir-4719 ; hsa-mir-6771-3p ; hsa-mir-4650-5p ; hsa-mir-1972 ; hsa-mir-8066 ; hsa-mir-3667-5p ; hsa-mir-1227-3p ; hsa-mir-1273e ; hsa-mir-1273h-5p ; hsa-mir-149-3p ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-203b-3p ; hsa-mir-219b-3p ; hsa-mir-2467-3p ; hsa-mir-298 ; hsa-mir-302f ; hsa-mir-30b-3p ; hsa-mir-30c-1-3p ; hsa-mir-30c-2-3p ; hsa-mir-3160-3p ; hsa-mir-3192-5p ; hsa-mir-3612 ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-3929 ; hsa-mir-4257 ; hsa-mir-4329 ; hsa-mir-4419b ; hsa-mir-4478 ; hsa-mir-4487 ; hsa-mir-455-3p ; hsa-mir-4649-3p ; hsa-mir-4715-3p ; hsa-mir-4728-5p ; hsa-mir-485-5p ; hsa-mir-508-5p ; hsa-mir-558 ; hsa-mir-5690 ; hsa-mir-6499-3p ; hsa-mir-650 ; hsa-mir-6511a-5p ; hsa-mir-6512-3p ; hsa-mir-6516-5p ; hsa-mir-665 ; hsa-mir-6720-5p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6785-5p ; hsa-mir-6788-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6884-5p ; hsa-mir-6889-3p ; hsa-mir-7106-5p ; hsa-mir-7158-3p ; hsa-mir-7160-5p ; hsa-mir-766-3p ; hsa-mir-873-3p ; hsa-mir-887-5p ; hsa-mir-890

Nearest miRNA

hsa-mir-12113/Upstream/2241534; hsa-mir-1305/Downstream/51080;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/7251, chr4-CpG: 76/Downstream/43661

Upstream sequence

atacgagaggattcgtgtaggttatgtcaaatactatgtcattttatatcaggcacttgagcatcttcagatcttggtatttgcagaaagtcccagaacc

Downstream sequence

aatcctcaaaagataccaaaggacaactgTATATATTTTGGATGGCAGTCTGTACACATTCTCTGTTATCATTCTGTTAGTTTCACAGCCTCTCCCAGAG