Basic Information
VIS ID
TVIS30008689
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q33
Reference genome
GRCh37/hg19
Start
171101922/170180771 (Hg38)
End
171101922/170180771 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/4794434; hsa-mir-1305/Downstream/1005413;
Nearest TSS
ENST00000502981/Upstream/89072; ENST00000504509/Downstream/93148;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/90419, chr4-CpG: 117/Downstream/1631812
Nearby gene
LINC01612(No orient, 45820)
Upstream sequence
tagagacagggtttcaccatactggccaggctggtcttgaactcctgacctcaagtgatccacctgcctccacctaccaaagtgctaggattacaggtgt
Downstream sequence
gagccactgcacccggctggtcttttcttttaagaccttcaactgactgggtgagacccactctcattacagtgagtaatctgctttactcaaagtctac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate