Basic Information
VIS ID
TVIS30008690
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q33
Reference genome
GRCh37/hg19
Start
171686690/170765539 (Hg38)
End
171686690/170765539 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/5379202; hsa-mir-1305/Downstream/420645;
Nearest TSS
ENST00000502981/Upstream/21821; ENST00000505329/Downstream/275063;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/675187, chr4-CpG: 117/Downstream/1047044
Nearby gene
LINC02431(No orient, 275063)
Upstream sequence
ATAAGGTATGAATGATTTAATTTCTTGTCAGATCTCACAAATTCAACATATAAATTAGAATGTAGTTCTAAGTATAACTCGAGTTACTGAATTAGATAAA
Downstream sequence
TGCCATAAAGTTACACATGGAAGTCTAATATTTGTGCACAGCTATAAGATATTAGATAAGAATGGATAAAGAAAGAATGGATAAAGGACTTGATTACAGG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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