VISDB Viral Integration Site DataBase

VIS ID

TVIS30008691

Fusion event

HIV-SCRG1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr4

Cytoband

q34.1

Reference genome

Start

End

174310185/173389034 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-4524a-3p ; hsa-mir-4524b-3p ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-23b-5p ; hsa-mir-23a-5p ; hsa-mir-4695-3p ; hsa-mir-2276-3p ; hsa-mir-1304-3p ; hsa-mir-6742-3p ; hsa-mir-6852-5p ; hsa-mir-939-3p ; hsa-mir-660-3p ; hsa-mir-6736-3p ; hsa-mir-6890-3p ; hsa-mir-1306-5p ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-937-5p ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-6499-3p ; hsa-mir-2467-3p ; hsa-mir-5702 ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-1827 ; hsa-mir-3192-5p ; hsa-mir-4257 ; hsa-mir-3174 ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-1273h-5p ; hsa-mir-149-3p ; hsa-mir-30b-3p ; hsa-mir-34c-3p ; hsa-mir-3614-5p ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-4728-5p ; hsa-mir-490-3p ; hsa-mir-550b-2-5p ; hsa-mir-6500-3p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6785-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-7106-5p ; hsa-mir-7851-3p

Nearest miRNA

hsa-mir-12113/Upstream/120801; hsa-mir-1305/Downstream/1034761;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/16912, chr4-CpG: 21/Downstream/111162

Upstream sequence

GTATTTCTCTTTGATTTTCCCAAAATCAAGTATACCCACACTGCTGTTCTCATCCCTTAACAGACATAATCACAAAATTATATCATAATATAAATGTAAG

Downstream sequence

TCCATTTCAGTAAACTGTTTTCAAGTCATACAAAAAAAAAGCAAACATGGCATTTTAATATTAGTTGGCATTTCATTTATGTAGTACAGGAAAAACTGTC