Basic Information
VIS ID
TVIS30008692
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q34.1
Reference genome
GRCh37/hg19
Start
174662091/173740940 (Hg38)
End
174662091/173740940 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/472707; hsa-mir-1305/Downstream/682855;
Nearest TSS
ENST00000502981/Upstream/181786; ENST00000509968/Downstream/156312;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/202037, chr4-CpG: 21/Downstream/473168
Nearby gene
HAND2-AS1(No orient, 199110)
Upstream sequence
tttaattagatcccatttgtcaattttggcttctgttgccattgcttttggtgttttagatatgaagtccttgcccatgcctatgtcctgaatggtaatt
Downstream sequence
cctaggttttcttctagggtttttatggttttagatctaacgtttaagtctttaatccatcttgaattaatttttgtataaggtgtaaggaagggatcca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate