Basic Information
VIS ID
TVIS30008699
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q35.1
Reference genome
GRCh37/hg19
Start
185298139/184376985 (Hg38)
End
185298139/184376985 (Hg38)
Orient
-
Location type
ncRNA_intronic
Nearest miRNA
hsa-mir-12113/Upstream/2207607; hsa-mir-3945/Downstream/474028;
Nearest TSS
ENST00000502981/Upstream/7115; ENST00000509538/Downstream/5279;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/208149, chr4-CpG: 20/Downstream/79457
Nearby gene
IRF2(+5756) ;
Nearest cancer related gene
IRF2(OG, +5756) ;
Upstream sequence
gtgtgtgtgtgtgtgtgtgtgtttacctttaaagcctcatagtttactaaaaatatctcagttattctctctaggtcagtttttctagatatagagtggg
Downstream sequence
cctcttcaatacatacattatattttctcttctttctggaaagttttcttgaattacagttccattccattgctttgtttttcttctccaggagctccta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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