Basic Information
VIS ID
TVIS30008700
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q35.1
Reference genome
GRCh37/hg19
Start
185491173/184570019 (Hg38)
End
185491173/184570019 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/2400641; hsa-mir-3945/Downstream/280994;
Nearest TSS
ENST00000502981/Upstream/32465; ENST00000509538/Downstream/54860;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/94992, chr4-CpG: 110/Downstream/78788
Upstream sequence
tttttagtagagacggggtttcaccatgttggtcaggctggtctctaattcctgacctcaggtgatctgcccgccttggcctcccaaagtgctgggatta
Downstream sequence
taggcgtgagctactgtgcccggcTTCGGCCTCTAAATTCTTTTTATGGAGCCTCATTTTCACAGTTAAATGTCTTCAATTGACTGTGGCCTGTTGGGAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate