Basic Information
VIS ID
TVIS30008705
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q35.2
Reference genome
GRCh37/hg19
Start
190144871/189223717 (Hg38)
End
190144871/189223717 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/4285277;
Nearest TSS
ENST00000502981/Upstream/30617; ENST00000513681/Downstream/67619;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/426450, chr4-CpG: 157/Downstream/83689
Nearby gene
LINC01262(No orient, 435889)
Upstream sequence
GCTCTGTGCATTATGGATAAAGCAATCAGAACATAAATTGTCAGTTTGGCTCATCACAATCCCTGAAGAGCTCAGTGAACACAGTGACCTGTTTTCCCAG
Downstream sequence
CCATCTCACAATAAAAACTAAACTGTGCCAGCTTTTTTAAGGAACATTCTAGAAAAAGTCATGGTATAACCTGCCAGCTCAGTTCCAGGAAAAAGTATTG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate