Basic Information
VIS ID
TVIS30008706
Fusion event
HIV-SDHA integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
p15.33
Reference genome
GRCh37/hg19
Start
222725/222610 (Hg38)
End
222725/222610 (Hg38)
Orient
+
Location type
Intronic
Target gene
SDHA
miRNAs that regulate target gene
hsa-mir-760 ; hsa-mir-222-3p ; hsa-mir-106a-5p ; hsa-mir-17-5p ; hsa-mir-31-3p
Nearest miRNA
hsa-mir-10397/Downstream/840286;
Nearest TSS
ENST00000502646/Upstream/4239; ENST00000509420/Downstream/3023;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/3597, chr5-CpG: 275/Downstream/36076
Nearest cancer related gene
SDHA(TSG, No orient, 0)
Upstream sequence
ctaattgttagtagagatggggttttgccatgttggccagactggtcttgaactcctgacttcaggtgatccacccaccttggcctccccaaatgctggg
Downstream sequence
attacaggcatgagccaccgtgcccagccCCTAAAACTATTCTTGATGATATTTCTGAGACTATTCAGTGGTCTTCTCAAATGTAGCCAGCAGAATGGAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate