Basic Information
VIS ID
TVIS30008713
Fusion event
HIV-TRIP13 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
p15.33
Reference genome
GRCh37/hg19
Start
904638/904523 (Hg38)
End
904638/904523 (Hg38)
Orient
-
Location type
Intronic
Target gene
TRIP13
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-193b-3p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-570-3p ; hsa-mir-3121-3p ; hsa-mir-4635 ; hsa-mir-885-5p ; hsa-mir-4800-5p ; hsa-mir-3138 ; hsa-mir-711 ; hsa-mir-4252 ; hsa-mir-7114-5p ; hsa-mir-4318 ; hsa-mir-328-5p ; hsa-mir-4723-5p ; hsa-mir-5698 ; hsa-mir-6795-5p ; hsa-mir-6825-5p ; hsa-mir-6870-5p ; hsa-mir-6885-5p ; hsa-mir-6887-5p ; hsa-mir-7106-5p ; hsa-mir-7109-5p ; hsa-mir-7111-5p ; hsa-mir-766-5p ; hsa-mir-7706
Nearest miRNA
hsa-mir-10397/Downstream/158373;
Nearest TSS
ENST00000502646/Upstream/10881; ENST00000509210/Downstream/10036;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/11206, chr5-CpG: 38/Downstream/7856
Upstream sequence
tctctgctggtgaattgcacttcagaagactatactttctccccttgctggatgcagtgttcGTCTCTAATTACGGATTTGTCTTTTCCTCttgagttct
Downstream sequence
gtctgtttggggcttatggttttcatcacatttggaaaatacctggtcattgtttcctcactgaatttccttgaccctcccctttatctgggactctgtc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate