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TVIS30008714
Basic Information
VIS ID
TVIS30008714
Fusion event
HIV-SLC12A7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
p15.33
Reference genome
GRCh37/hg19
Start
1106453/1106338 (Hg38)
End
1106453/1106338 (Hg38)
Orient
-
Location type
Intronic
Target gene
SLC12A7
miRNAs that regulate target gene
hsa-mir-335-5p
;
hsa-mir-148b-3p
;
hsa-mir-6775-3p
;
hsa-mir-7976
;
hsa-mir-1291
;
hsa-mir-6734-3p
;
hsa-mir-1203
;
hsa-mir-6756-3p
;
hsa-mir-3127-3p
;
hsa-mir-4747-3p
;
hsa-mir-6792-3p
;
hsa-mir-4691-5p
;
hsa-mir-4276
;
hsa-mir-4312
;
hsa-mir-202-3p
;
hsa-mir-98-5p
;
hsa-mir-4500
;
hsa-mir-4458
;
hsa-let-7i-5p
;
hsa-let-7g-5p
;
hsa-let-7f-5p
;
hsa-let-7e-5p
;
hsa-let-7d-5p
;
hsa-let-7c-5p
;
hsa-let-7b-5p
;
hsa-let-7a-5p
;
hsa-mir-766-3p
;
hsa-mir-4267
;
hsa-mir-152-3p
;
hsa-mir-148a-3p
;
hsa-mir-519e-3p
;
hsa-mir-515-3p
;
hsa-mir-33b-3p
;
hsa-mir-6773-5p
;
hsa-mir-6724-5p
;
hsa-mir-527
;
hsa-mir-518a-5p
;
hsa-mir-488-3p
;
hsa-mir-3147
;
hsa-mir-4425
;
hsa-mir-296-5p
;
hsa-mir-6851-3p
;
hsa-mir-3194-5p
;
hsa-mir-4780
;
hsa-mir-520h
;
hsa-mir-520g-3p
;
hsa-mir-519c-3p
;
hsa-mir-519b-3p
;
hsa-mir-519a-3p
;
hsa-mir-301a-3p
;
hsa-mir-454-3p
;
hsa-mir-4295
;
hsa-mir-3666
;
hsa-mir-301b-3p
;
hsa-mir-130b-3p
;
hsa-mir-130a-3p
;
hsa-mir-19b-3p
;
hsa-mir-19a-3p
;
hsa-mir-3180-5p
;
hsa-mir-6720-5p
;
hsa-mir-6512-3p
;
hsa-mir-525-5p
;
hsa-mir-520a-5p
;
hsa-mir-6124
;
hsa-mir-6830-5p
;
hsa-mir-6849-3p
;
hsa-mir-5586-5p
;
hsa-mir-651-3p
;
hsa-mir-4511
;
hsa-mir-605-5p
;
hsa-mir-3133
;
hsa-mir-146b-3p
;
hsa-mir-1587
;
hsa-mir-223-3p
;
hsa-mir-29b-1-5p
;
hsa-mir-302c-3p
;
hsa-mir-339-5p
;
hsa-mir-3620-5p
;
hsa-mir-3652
;
hsa-mir-4263
;
hsa-mir-4265
;
hsa-mir-4296
;
hsa-mir-4322
;
hsa-mir-4417
;
hsa-mir-4430
;
hsa-mir-4492
;
hsa-mir-4498
;
hsa-mir-4505
;
hsa-mir-4509
;
hsa-mir-4656
;
hsa-mir-4675
;
hsa-mir-4697-3p
;
hsa-mir-4741
;
hsa-mir-4744
;
hsa-mir-4795-5p
;
hsa-mir-4799-5p
;
hsa-mir-5001-5p
;
hsa-mir-520f-3p
;
hsa-mir-576-5p
;
hsa-mir-5787
;
hsa-mir-6829-5p
;
hsa-mir-6842-3p
;
hsa-mir-762
Nearest miRNA
hsa-mir-4635/Upstream/43364; hsa-mir-10397/Downstream/202972;
Nearest TSS
ENST00000502646/Upstream/12763;
ENST00000515652/Downstream/5697;
Nearest CpG islands
None/Target,
chr5-CpG: 87/Upstream/5689
,
chr5-CpG: 18/Downstream/2349
Upstream sequence
ggccaggagttcaaaaccagcttggccaacatggcaaaaccccatctgcactataaatataaaacttagccaggcgcggtggtgcgtgcctgtggtcccc
Downstream sequence
gctactcgggaggctgaggcacgagaatcgcttgaacctgggaggcagaggttgcagtgagctgagtctgtgccactgcactccagcctgggtgacagag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Central Memory CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
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