Basic Information
VIS ID
TVIS30008715
Fusion event
HIV-LINC01511 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
p15.33
Reference genome
GRCh37/hg19
Start
1367852/1367737 (Hg38)
End
1367852/1367737 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LINC01511
Nearest miRNA
hsa-mir-4457/Upstream/58360; hsa-mir-10397/Downstream/143025;
Nearest TSS
ENST00000502646/Upstream/22638; ENST00000605200/Downstream/658;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/22383, chr5-CpG: 72/Downstream/18126
Upstream sequence
agaccagcctggccaacatggtgaaaccccgtctctactaaaaatataaaaattagctgggcgtggtggcgcatgcctgtaatcccagctactcgggagg
Downstream sequence
ctgaggcaggagaattgtttgaacccaagaggcagaagttgtggtgagccaagatggtgccattgcactccagcctgggcaacaagagcgaaactccgtc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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