Basic Information
VIS ID
TVIS30008716
Fusion event
HIV-chr5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
p15.33
Reference genome
GRCh37/hg19
Start
1536906/1536791 (Hg38)
End
1536906/1536791 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-4457/Upstream/25935; hsa-mir-10397/Downstream/171994;
Nearest TSS
ENST00000502646/Upstream/12814; ENST00000605200/Downstream/14919;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/12318, chr5-CpG: 18/Downstream/16129
Nearby gene
LPCAT1(No orient, 12830)
Upstream sequence
atgtctcttctctttttagggctcccccttacccttcagtggattttctgtcatagtgtttgccactctgtgctgttctaacctctggctcaaagctaca
Downstream sequence
aaatgggacagttccctgtgtatatctcttcttacaaggtttacctcccatccccaatttgccagcttttgttcattctccaAGATAGGTCATCAAAACA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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