Basic Information
VIS ID
TVIS30008717
Fusion event
HIV-LOC112267947 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
p15.33
Reference genome
GRCh37/hg19
Start
1999262/1999148 (Hg38)
End
1999262/1999148 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC112267947
Nearest miRNA
hsa-mir-4277/Upstream/290280; hsa-mir-10397/Downstream/4828705;
Nearest TSS
ENST00000502646/Upstream/31054; ENST00000626215/Downstream/713443;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/47591, chr5-CpG: 38/Downstream/8053
Nearby gene
CTD-2194D22.4(No orient, 98658)
Upstream sequence
TTTTGGATGCAGATGTGAAAGTTTATTGCATTTCTTTTGTGGTTTTCCTGATGCAACTCTGGAAGACAGACTTGGAGGAAGTTCAGGGAAATGCAAAATA
Downstream sequence
TTCATCACTGTGGTTGACCTAGAATAAGCGTCTCGCTCTAAACACGGAGGAGAGGATGACACTTAGGAAAGGATTAGGGAACTATGGCCAGGTCTCCTCC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate