Basic Information
VIS ID
TVIS30008718
Fusion event
HIV-CTNND2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
p15.2
Reference genome
GRCh37/hg19
Start
11472625/11472513 (Hg38)
End
11472625/11472513 (Hg38)
Orient
-
Location type
Intronic
Target gene
CTNND2
Nearest miRNA
hsa-mir-10397/Upstream/994368; hsa-mir-103a-1/Downstream/3353416;
Nearest TSS
ENST00000502646/Upstream/86502; ENST00000505877/Downstream/116298;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/87104, chr5-CpG: 141/Downstream/430925
Nearest cancer related gene
CTNND2(OG, No orient, 0)
Upstream sequence
CATTGATTTTTCCAGACAAACTTCAGATTAATTTTCTTCCCAGATTCTTGCCTCATCCCTAATTAATTGCCTTTAAATTTGAATTTTATTAAATCTATGA
Downstream sequence
GTGTATTTGGGGAGAACTTGCATCTTTTCAATATTTAGTATTTACGTTTTTGTCTTTTTACTCAATTCTGTAAGTTTCTGCATTTCAATCTTAGGAAATT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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