Basic Information
VIS ID
TVIS30008722
Fusion event
HIV-chr5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
p15.1
Reference genome
GRCh37/hg19
Start
16472914/16472805 (Hg38)
End
16472914/16472805 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/537545; hsa-mir-103a-1/Downstream/683125;
Nearest TSS
ENST00000502646/Upstream/7013; ENST00000504935/Downstream/5260;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/6454, chr5-CpG: 94/Downstream/143595
Nearby gene
RETREG1(No orient, 233)
Upstream sequence
ATAGTTATAATGCTGCTGTCCCTAGAGAGCTGGCATGTCTCCTCAATAGTGGTAATAGCACATTTTTCTACCCTACCAACTTCCTCCCATCCTCACACCC
Downstream sequence
CTTTTAATTTGTAGTTATTAACATTTTATTCTAGATTTATTGTTCATACCACCACAGATTATCAGCCCTTGAGTTCGTCTTCCTGTAAGGTCATCTAGTG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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