VISDB Viral Integration Site DataBase

VIS ID

TVIS30008724

Fusion event

HIV-BASP1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr5

Cytoband

p15.1

Reference genome

Start

End

17230035/17229926 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-21-5p ; hsa-mir-193b-3p ; hsa-mir-877-3p ; hsa-mir-4644 ; hsa-mir-510-3p ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-4784 ; hsa-mir-3150b-3p ; hsa-mir-494-3p ; hsa-mir-6888-5p ; hsa-mir-6856-5p ; hsa-mir-6758-5p ; hsa-mir-8068 ; hsa-mir-668-3p ; hsa-mir-1255b-5p ; hsa-mir-1255a ; hsa-mir-483-3p ; hsa-mir-4712-3p ; hsa-mir-1265 ; hsa-mir-2392 ; hsa-mir-3123 ; hsa-mir-33a-3p ; hsa-mir-562 ; hsa-mir-4764-3p ; hsa-mir-539-5p ; hsa-mir-586 ; hsa-mir-502-5p ; hsa-mir-6774-5p ; hsa-mir-635 ; hsa-mir-4742-3p ; hsa-mir-3189-3p ; hsa-mir-212-5p ; hsa-mir-486-5p ; hsa-mir-4793-5p ; hsa-mir-191-5p ; hsa-mir-1273g-3p ; hsa-mir-181a-2-3p ; hsa-mir-335-3p ; hsa-mir-3692-3p ; hsa-mir-3976 ; hsa-mir-4436b-5p ; hsa-mir-4445-5p ; hsa-mir-499b-5p ; hsa-mir-5186 ; hsa-mir-5696 ; hsa-mir-579-3p ; hsa-mir-6509-3p ; hsa-mir-664b-3p

Nearest miRNA

hsa-mir-10397/Upstream/73934; hsa-mir-103a-1/Downstream/14706176;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/11400, chr5-CpG: 59/Downstream/45334

Nearest cancer related gene

BASP1(TSG, No orient, 0)

Upstream sequence

aggctggagtgcagtggcactatcttggctcactgcaacctctgcctcccgggttcaagcagttctctgcctcagcctcccaagtagctgggattatagg

Downstream sequence

cgtgtgccaccacgcccagctaatttttttgtatttttagtagagatagggtttcaccatcttggccaggctggtcttgaactccaaagtgctgggatta