Basic Information
VIS ID
TVIS30008729
Fusion event
HIV-chr5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
p14.1
Reference genome
GRCh37/hg19
Start
26308623/26308514 (Hg38)
End
26308623/26308514 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA5E
Nearest miRNA
hsa-mir-10397/Upstream/9152522; hsa-mir-103a-1/Downstream/5627588;
Nearest TSS
ENST00000502646/Upstream/862589; ENST00000514255/Downstream/91305;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/398972, chr5-CpG: 28/Downstream/360925
Nearby gene
CDH9(No orient, 572086)
Upstream sequence
gcctgttgtggggttgggggaggggggagggatagcattaggagatatacctaatataaatgacgagttaatgggtgcagcacagcaacatggcacatgt
Downstream sequence
atacatatgcaacaaacctgcacgttgtgcacgtgtaccctagaacttaaagtataataataataaaaagaTAATCGTTGATATCTGgagagaaaaaggt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate