Basic Information
VIS ID
TVIS30008730
Fusion event
HIV-chr5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
p14.1
Reference genome
GRCh37/hg19
Start
28403721/28403614 (Hg38)
End
28403721/28403614 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA5E
Nearest miRNA
hsa-mir-10397/Upstream/11247622; hsa-mir-103a-1/Downstream/3532488;
Nearest TSS
ENST00000502646/Upstream/115949; ENST00000602801/Downstream/405635;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/1733819, chr5-CpG: 76/Downstream/405679
Nearby gene
LSP1P3(No orient, 523256)
Upstream sequence
GACCTATTTATGCCCAGAACCGTTAAATATTTAATTCATGACTTTACTTTGAGCACTAGTTCTTACTCCCCTATTTTCAATTAGTTGGTATAGAACATTT
Downstream sequence
TATTATATACCCCCGATACTGATATTAATTAACAAGTTTTTAGTTACAATTCAGTCACTAATTAGTTGAATTATCAGAAGCAAGTTAATCATATAGAGAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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