Basic Information
VIS ID
TVIS30008735
Fusion event
HIV-C1QTNF3-AMACR integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
34114714/34114609 (Hg38)
End
34114714/34114609 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA5A
Target gene
C1QTNF3-AMACR
Nearest miRNA
hsa-mir-10397/Upstream/1720134; hsa-mir-103a-1/Downstream/2033283;
Nearest TSS
ENST00000502646/Upstream/70777; ENST00000607051/Downstream/9919;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/106381, chr5-CpG: 131/Downstream/541409
Upstream sequence
AATTTTTCTGGGACTTATATTTTCCTGTGTAAAGCCTATATTTCATATAGTTATTTTATATCCACAGAGATGAACTCACATTCtatcttattttgacaga
Downstream sequence
tcattttactttttttttgttttaccattttgcttttcctttttgctcaattgcacactttatttcaaatgctcagttttatacttaaagttttaatatg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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