Basic Information
VIS ID
TVIS30008737
Fusion event
HIV-SPEF2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
35814621/35814519 (Hg38)
End
35814621/35814519 (Hg38)
Orient
-
Location type
Exonic
Fragile sites / regions
FRA5A
Target gene
SPEF2
Nearest miRNA
hsa-mir-10397/Upstream/3420044; hsa-mir-103a-1/Downstream/333373;
Nearest TSS
ENST00000502646/Upstream/33199; ENST00000515665/Downstream/12499;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/196282, chr5-CpG: 85/Downstream/336876
Upstream sequence
CCTTTATTAGTATTTGTAACTTCTCTTTGAATCTTTTGTCTTAGGATATTAAAATAATTCTCCAAAGGAGTGAACATGTACAAGGAAGTGATGGAGAGAG
Downstream sequence
ATCACCTTCAAGACATACAGAGGAAAAGAAATGAAGACAAAAGAGTGTGATTTTTTTAATTCTGCAATAAATCTTCCAAAAATTAAATGTGACCATGGTG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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