Basic Information
VIS ID
TVIS30008738
Fusion event
HIV-chr5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
36186338/36186236 (Hg38)
End
36186338/36186236 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA5A
Nearest miRNA
hsa-mir-10397/Upstream/38248; hsa-mir-103a-1/Downstream/2371266;
Nearest TSS
ENST00000502646/Upstream/33305; ENST00000501794/Downstream/21027;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/33959, chr5-CpG: 127/Downstream/54665
Nearby gene
SKP2(No orient, 2196)
Nearest cancer related gene
SKP2(OG, No orient, 2196)
Upstream sequence
cttaaggagattttggctgagacgatggggttttctaaatatacaatcatgtcatctgcaaacagggacaatttgacttcctcttttcctaattgaatac
Downstream sequence
gctttatttctttctccttcctgattgccctggccagaacttccaacactatgttgaataggagtggtgagagaggtcatccctgtcttaggccagtgtt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate