Basic Information
VIS ID
TVIS30008773
Fusion event
HIV-chr5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
56318472/57022645 (Hg38)
End
56318472/57022645 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA5H
Nearest miRNA
hsa-mir-10397/Upstream/1513719; hsa-mir-103a-1/Downstream/1507398;
Nearest TSS
ENST00000502646/Upstream/50970; ENST00000513732/Downstream/151303;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/70121, chr5-CpG: 141/Downstream/150546
Nearby gene
MIER3(No orient, 70515)
Upstream sequence
tactaccgtatgatttcatggggtttatccaaaaagtacaagattaggtcagtacagtggctcacacctgtaatctcagaactttgggaggctgaggcgg
Downstream sequence
gcagatcatttgaggtcaggagtttgagaccagcctggccaacatgatgaaaccccatctctactaaaaatacaaaaattagttatgtgtggtggtgggc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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