Basic Information
VIS ID
TVIS30008774
Fusion event
HIV-chr5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
57744766/58448939 (Hg38)
End
57744766/58448939 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA5H
Nearest miRNA
hsa-mir-10397/Upstream/2940013; hsa-mir-103a-1/Downstream/81104;
Nearest TSS
ENST00000502646/Upstream/326598; ENST00000513924/Downstream/6177;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/1274245, chr5-CpG: 157/Downstream/10568
Nearby gene
PLK2(No orient, 5044)
Nearest cancer related gene
PLK2(TSG, No orient, 5044)
Upstream sequence
gtaaaagaaattataccacagaaattggcaaatgaaacaaatcaaggttctggccacctctgaaaaagctgactgctaaacatttattagtatatcaGTA
Downstream sequence
GTTATGTTATTATCTAATTCTTTGTCTGCACTCCCCTCCAGAATACCCTATCACGTTTGGATTTTGCATTTCTTTATCTCTTGAAATATTTAAAGATCTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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