Basic Information
VIS ID
TVIS30008780
Fusion event
HIV-CWC27 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
64093551/64797724 (Hg38)
End
64093551/64797724 (Hg38)
Orient
-
Location type
Intronic
Target gene
CWC27
miRNAs that regulate target gene
hsa-mir-24-3p ; hsa-mir-340-5p ; hsa-mir-4635 ; hsa-mir-3163 ; hsa-mir-548c-3p
Nearest miRNA
hsa-mir-10397/Upstream/5094021; hsa-mir-103a-1/Downstream/7371743;
Nearest TSS
ENST00000502646/Upstream/23872; ENST00000506168/Downstream/2521;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/29013, chr5-CpG: 47/Downstream/237681
Upstream sequence
TAAACAAGAACCTTTTTAAAAAAATTAATtactttttaaattagctaaatggagctaattaacatatgaattacctcacatgcttatcatttcttgtgag
Downstream sequence
gagaaaacttaaaatcgctcttagtggttttcaagaatacaatacaAGAACCCATTTTAAAAATATATTAACAATGAAATTAACAATTGTAAACTAACAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate