VISDB Viral Integration Site DataBase

VIS ID

TVIS30008781

Fusion event

HIV-NLN integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr5

Cytoband

q12.3

Reference genome

Start

End

65066207/65770380 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-16-1-3p ; hsa-mir-27a-3p ; hsa-mir-27b-3p ; hsa-mir-144-3p ; hsa-mir-370-5p ; hsa-mir-374a-5p ; hsa-mir-374b-5p ; hsa-mir-627-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-3681-3p ; hsa-mir-7152-5p ; hsa-mir-3074-5p ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-548s ; hsa-mir-1200 ; hsa-mir-378a-5p ; hsa-mir-3926 ; hsa-mir-5189-3p ; hsa-mir-548av-3p ; hsa-mir-5582-3p ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p ; hsa-mir-6507-3p ; hsa-mir-7856-5p ; hsa-mir-3658 ; hsa-mir-499a-5p ; hsa-mir-208b-3p ; hsa-mir-208a-3p ; hsa-mir-593-3p ; hsa-mir-6879-3p ; hsa-mir-215-3p ; hsa-mir-6773-3p ; hsa-mir-500b-3p ; hsa-mir-1182 ; hsa-mir-4524b-3p ; hsa-mir-641 ; hsa-mir-3617-5p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-6873-3p ; hsa-mir-4713-5p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-6845-3p ; hsa-mir-2116-3p ; hsa-mir-26a-2-3p ; hsa-mir-26a-1-3p ; hsa-mir-193a-5p

Nearest miRNA

hsa-mir-10397/Upstream/6066677; hsa-mir-103a-1/Downstream/6399087;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/47695, chr5-CpG: 158/Downstream/154551

Upstream sequence

tgaaaccagtgatgcattctaggatatataaagaactactacaatcaataacaaagaaacatcccagtagaaaaatgggcaaatgatatgtagaaatatt

Downstream sequence

tcaacagaaacgcacatagcaatcaaatgtatgaaaagatgttcaattttattagtaatcagagaaatgcaaatgaagaccataataagttaccattctt