Basic Information
VIS ID
TVIS30008782
Fusion event
HIV-chr5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
66496045/67200217 (Hg38)
End
66496045/67200217 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/7496514; hsa-mir-103a-1/Downstream/4969250;
Nearest TSS
ENST00000502646/Upstream/3418; ENST00000515077/Downstream/67805;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/36450, chr5-CpG: 159/Downstream/1014827
Nearby gene
CD180(No orient, 3428)
Upstream sequence
TTTATAATCTGGGAGTGATTTGGGGTCCTATAACTCTTTATTTGGCTCTTCAGGCTCTTTCCTGGTGATAACTCAAAGGCTAATGTACTTTCTTTCAAGG
Downstream sequence
ATGTGCAAACCAAAATATGCTTTTGTGATCTAAGTTTAGCAAAAAGCTAGATATTTTTAAAATAATTTCATTAGGGGATTAAAACAATAATTTATATTAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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