Basic Information
VIS ID
TVIS30008784
Fusion event
HIV-chr5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
67143954/67848126 (Hg38)
End
67143954/67848126 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/8144423; hsa-mir-103a-1/Downstream/4321341;
Nearest TSS
ENST00000502646/Upstream/29804; ENST00000520762/Downstream/41970;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/684359, chr5-CpG: 159/Downstream/366918
Nearby gene
LOC101928858(No orient, 47068)
Upstream sequence
ATTTTACATATGAACCCTGGTGTAGTCACATAATAGATGtttaaattttttttaaattaattCAATTTCTCAGCTCAAATCCTTGAACTATACTCATAAT
Downstream sequence
AGCTGGTAAAATTGTAAAATTAAGCAGACTTTATGGAAAGCAATCAAAATGCATATGGTAAAAGCTCTTAAAAtattttaagaagataaacaaaaaatgt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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